• Installation
• Examples
  • Getting started
  • Launching the network chart
• Usage
  • Core module
  • Tree module
  • Subset module
  • Extract module
• Reports
  • Summary Report
  • Core Gene Count Report
  • Roary Gene Count Report
  • Pairwise Report
  • Network Chart
  • Gene Count Curve

External Dependencies

These programs will be automatically installed with the conda package.

• Prokka
• MMseqs2
• SeqKit
• MUSCLE